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Add a module for [multiqc tool](https://github.com/ewels/MultiQC#contributions--support) that parses the example [stats file](https://github.com/miRTop/mirtop/blob/dev/data/examples/stats/mirtop_stats…
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Hi there, I recently came across pairtools and I am super excited to start implementing it in our workflows. I tried to visualize the stats file via multiqc, but encountered this error. Do you have an…
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The inspect command reports the container used during a pipeline execution, for example:
```
» nextflow inspect . -profile wave
{
"processes": [
{
"name": "RNASEQ:INDE…
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gitpod /workspace/dp_tools (metrics_extraction_subfeature) $ python download_multiqc_from_OSD.py --osd-id --output-dir multiQC_output_ASB
Usage: download_multiqc_from_OSD.py [OPTIONS]
Try 'download_…
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MultiQC HTML visualisation not correct as it is in zip format. Liase with IRIDA core team.
zipho updated
3 years ago
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Module 'samtools: 'This file was produced by samtools stats' not found in the file 'ERR4707731' to fix in multiqc. Especially with a large collection with 4000 files multiqc fails as soon as "one" (?)…
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Issue by @meixilin, moved here from https://github.com/moiexpositoalonsolab/grenepipe/issues/36#issuecomment-2270384816
Hi,
I have an issue that might be relevant to this thread. I have noticed…
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mamba install -n phylo iqtree==2.3.3 mafft==7.525
Took a pretty long time to install, may be we could find a less realistic example :-p
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**Snakemake version**
7.24
**Describe the bug**
In params, I have the following line to specify that the config file for multiqc is in the following location (which is specified relative to whe…
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MultiQC is used to collate as many of the logs as possible in the pipeline. However, the summary table is a bit verbose since it puts the HuGo alignment, pre-trimming and post-trimming values into sep…