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Take a look at following issues:
- [x] Straightening process relative to existing data set
- [ ] Scaling new data set relative to existing data set -- with goal of having 3D representation of both d…
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When I tried to extract the downloaded micronet model for nuclei segmentation I get this error. There is something wrong with your file.
Archive: micronet_prcc.zip
End-of-central-directory signat…
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How could I segment nuclei in an image showing fluorescent nuclei using Python and Deep Learning?
git-bob comment on this.
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I tried CZI from our confocal with z-stack and I got this error:
Performing segmentation on file 1 of 2
---------------------------------------------------------------------------
UnboundLocal…
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Hi there,
When I segment polyonal cells using Cellpose, I found some single pixel outlier.
Like in this labeled image, that pixel has the same label ID that the brown big cell to the right. When …
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Hi, I had some questions about the cluster annotation after cell segmentation
I tried to map the single-cell data to Visium and got the probability of the spatial location of cell group ExcNeurons3…
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As far as I can tell, most of the outputs are per-observation files/information (like expression per nuclei, boundary, membrane etc. per cell) which fits well into the AnnData model i.e each `obs` var…
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Dear scverse Team,
First of all, thank you for your effort on developping integrative frameworks for spatial transcriptomics data.
Now, I'm analyzing MERFISH data using spatialdata. When I use c…
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Nice work!
The listed experiments shown the U-shape Swin Transformer could capture global and local information. However, its ability to capture small target information has not yet been shown, i.e…
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The dataset consists of diverse H&E stained tissue
images captured from seven different organs (e.g., breast, liver, kidney, prostate,
bladder, colon and stomach), which were collected from 18 insti…