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Belinda found this dataset: https://febs.onlinelibrary.wiley.com/doi/full/10.1002/1878-0261.12086
Drug screen of ~6 MPNST cell lines - pull drug response data from supp table 5: https://febs.onlineli…
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Suggestion for potential improvement. The individuals:measures object (https://github.com/ga4gh-beacon/beacon-v2/blob/main/models/src/beacon-v2-default-model/common/measurement.yaml) including assayCo…
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Hi, I am trying to run velocyto on 10x output, but unable to troubleshoot. Does anyone have a clue as to what could be wrong? Thanks!
Code:
`velocyto run10x -m mm10_rmsk.gtf /results/sample1 /gene…
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(base) root@f79aaa9343bd:/open-omics-alphafold# bash online_inference_baremetal.sh /opt/conda ${PWD} /afdb/AlphaFold2_DB_2023-11-23 /data/input /data/output model_3 30
bf16 variable: True
/opt/cond…
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Hi,
I have tried running inference.py on 363 complexes given on testset_csv.csv. But getting failed cases on CPU are 21 complexes (linalg.svd: The algorithm failed to converge because the input matr…
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## Purpose
One need to be able to sort pixel sets list by a custom column.
## Proposal
Add a `order_by` field to the `PixelSetFiltersForm`. Allowed choices are:
* (-)analysis
* (-)experim…
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https://www.nature.com/nbt/journal/v35/n5/full/nbt.3790.html - Discovering and linking public omics data sets using the Omics Discovery Index
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It was with great interest that I read your recent publication in Nature Methods titled "scGPT: toward building a foundation model for single-cell multi-omics using generative AI" . I found your work …
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https://github.com/Reed-CompBio/spras/security/dependabot/1 reported a vulnerability in the version of NumPy used by Omics Integrator 1. However, we cannot update NumPy to the version that fixes this…
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Thanks and regards as ever to the devs.
I'm considering several sets of 'omic data generated from the same cohort of ```FASTQ``` files (i.e. taxonomic, pathways, etc). The way of the CoDa seems a …