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Dear Saeyslab team,
Thanks for the nice package!
I have been running the analysis on multiple datasets using the following vignette: https://github.com/saeyslab/multinichenetr/blob/main/vignette…
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The idea is to link genomic mutations, transcriptomics and phosphoproteomics to assess whether the networks can successfuly recover a large share of elements that are responsive to the genetic perturb…
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We are trying use Adios2 SST for RDMA support on [Jean-zay] (http://www.idris.fr/eng/jean-zay/jean-zay-presentation-eng.html) which does not have Infiniband but an MPI-OmniPath network.
We tried to…
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Hi,
I could run the SAW pipeline until 02.count, then I get the following error for the 04.tissuecut step:
> singularity exec SAW_7.0.sif tissueCut -i pipeline_testing/stereopipeline/02.count/B020…
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## Testing
5.6 GB/s `rdsend /dev/null`
4.8 GB/s `rdsend big_file` to `rdrecv >/dev/null` -- File I/O read is slower, rewrite it.
6.1 GB/s qperf host rc_bw
5.0 GB/s `fio` write test with numjo…
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## Description
When the `groups`parameter is specified in `sq.pl.spatial_segment` the cells that are plotted are not the cells where `adata.obs[color].isin(groups)`. For example with the `mibitof` …
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All,
This is a bit of an open-ended issue as I'm looking for advice. Namely, I have an issue open with Intel (currently internal, though here is the [original Forum Post](https://community.intel.co…
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Hi,
thank you for this nice package. I am encountering an issue which has been archived in the old github repository. I expanded the CellChat database with the Omnipath resource and I ran CellChat …
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Hello,
I'm having issues on memory usage when I run the find_marker_genes function on my dataset.
My dataset:
```
StereoExpData object with n_cells X n_genes = 118420 X 24009
bin_type: cell_…
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Hi,
Thank you for this awesome package!
I would like to draw the attention to the following error log I get when using GitHub actions to check my package. This happens regardless of platform and…