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Hi
I'm trying to use dMaSIF for interaction prediction between proteins (taking a target and finding the best binder in a large collection of potential binders)
At the moment, I process both bin…
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http://doi.org/10.1002/minf.201600045 (_edited with link_)
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Hi developer,
Thanks you for your program. It is quite easy to use and generate valuable results.
I want to get help with the de novo protein structure prediction using PSIPRED. I always got th…
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Regarding the issue of de novo gene structure prediction, it seems that there is no model for watermelon in the Augustus software. Did you build the model yourself? How can one construct a reasonable …
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For @mariacm12 `asap-genetics` pipeline we need to have a protein structure prediction pipeline. @hmacdope to investigate.
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After successfully installing RF2NA in my linux workstation, I tried to run these commands
```
# run Protein/RNA prediction
../run_RF2NA.sh rna_pred rna_binding_protein.fa R:RNA.fa
# run Protein…
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I get this error when trying to run prank rescore: "Dataset must contain 'protein' and 'prediction' columns!"
What is the format that the input needs to have?
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I followed your method to generate secondary structure sequences for proteins in cafa3 and then performed one-hot encoding on them to create features. However, the prediction performance is not satisf…
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https://doi.org/10.1101/168120 (http://www.biorxiv.org/content/early/2017/07/25/168120)
> Accurate annotation of protein functions is important for a profound understanding of molecular biology. A …
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-successfully changed directories to /public/home/zhaoli/dama/annotation/hap1/rna-seq/EMV/HiC_scaffold_3_1/HiC_scaffold_3_1_27930001-28430000
-reading genomic sequence.
** Processing features (+…