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Hi Dr. Huang
Thank you for your great work.
If I want to sample small molecules for a specific pocket of a protein, how should I use the script of sample_for_pdb.py? Currently, sample_for_pdb.py…
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How can I reduce the font size for the labels above the heatmap showing missing values?
```{r}
plot_missval(se = plate1_norm,
column_title = "Proteins with missing values for plate …
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Hey,
I found that the number of **Proteins.Identified** in the *rep.stats.tsv* file could not match the number of proteins in other matrix tables. The number of Proteins Identified in the *report.sta…
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I have a system of water + small proteins, and want to understand their clustering behaviour, but running `mdvseg - f md.tpr -x md.xtc -si 'name BB'` (or even without the `-si`) results in an error re…
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Hello,
I've tried to annotate genome with both RNASeq and proteins database. For certain genomes it worked but for some others it failed with similar errors as described in #582 and #577 (see logs …
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* Show multiple entropy plots, one for each gene/protein
* Change dropdown selector to a multi-select dropdown (same as in metadata)
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I am running emapper.py on a cluster, and I tried to run a test on one .faa. I have exported the data dir to EGGNOG_DATA_DIR="/storage/scratch/eggnog_db". I ran the test using the following command (s…
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Hi,
I am just curious is it possible to get the embedding of proteins and relations in https://www.zjukg.org/project/ProteinKG25/ separately using huggingface ontoprotein model ( https://huggingfa…
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@pmasson55 proposes that we change definition of the following terms to allow annotation of host proteins:
'biological process involved in interaction with host'
'biological process involved i…