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Hi!
I try to run RATTLE with my fastq reads (direct RNA sequencing):
`./rattle cluster -i my.fastq -t 24 --fastq --iso --rna -r 5
`
I got an error:
what(): cannot create std::vector larger…
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A form to be filled in at the end of a mouses life, it will include the following information:
- reason
- end of experiment
- humane endpoint
- freeform reason
- type of termina…
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Hi nanom6a team! I noticed that you used m6A sites identified by miCLIP from public data (Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification) in Fig…
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Attached is some background reading on Principal Components Analysis (PCA) and RNA-Sequencing.
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RNA-Sequencing (RNA-Seq) is a popular method for determining the presence and quantity of RNA in biological samples. In this 3 hour workshop, we will use R to explore publicly-available RNA-Seq data f…
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From Allison Heath and Eric Wenger:
Good morning, quick question on what the Ontology WG recommends for c2m2 OBI id's in several cases where we are not seeing matches.
Kids First data has several…
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We use merged platform because adding RNA-Seq data require that the same platform is used for all the samples. This is unnecessary because ultimately these platforms get replaced by a generic expressi…
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Nice way to visualize introns in RNA-Seq
Intro: http://haldanessieve.org/2013/06/18/our-paper-sashimi-plots-quantitative-visualization-of-rna-sequencing-read-alignments/
Paper: http://arxiv.org/pdf/…
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Dear Peng,
I wonder if it is possible to use Deepsignal to detect methylations in RNA from samples sequenced by the direct RNA sequencing kit from ONT.
I think about training a model by using comp…