-
Hi, I am working with Nanopore direct-RNA sequencing and found your tools really useful. However, while I was trying to use your BamSlam script to generate some summaries and figures for the alignment…
-
Project: ENCODE
So - we are working with a new High Throughput Sequencing Assay: icSHAPE, that captures RNA secondary structure.
NTR: "icSHAPE"
Editor preferred term: "icSHAPE"
Alternative…
-
The file type fg.gz is very common for RNA sequencing data and it would be great to add (especially since I have a dataset with many of these files)
-
Project Title: Systematic comparative analysis of single cell RNA-sequencing methodsProject Short Name: scRNAseqSystemicComparisonProject UUID: 88ec040b-8705-4f77-8f41-f81e57632f7dWrangler/s: Chris,,V…
-
I noticed starsolo was designed to work in many different platforms of scRNAseq, e.g. 10X/Indrop/SeqWell. However, I don't find the corresponding category for single cell combinatorial indexing RNA …
-
Hi nanom6a team! I noticed that you used m6A sites identified by miCLIP from public data (Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification) in Fig…
-
*Note:*
This task is too large for one ticket. Break this ticket up in to smaller tickets.
---
Clone the current RNA NGS workflow chain (via YML file) for Toni's lab and adjust accordingly for…
-
The user guide describes how purity estimation is done for DNA sequencing. But, could a couple of sentences be added that comment on how feasible it is to do with RNA sequencing? It would be interesti…
-
Hi,
Could you provide the code on how to convert the original GEO data to 2 DNA sequencing + 2 RNA sequencing files to directly apply your scripts here ? Thanks.
-
NGX Bio send me these names:
- Jon Choi, DNA Link: jon.choi@dnalink.com
- Mike Covington, Amaryllis Nucleics