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The version of libsbml in SVN right now, and which will be part of the next release, changes how ASTNodes are handled in such a way that it might slow things down in roadrunner. The developers are in…
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Hello, there is an issue with **InitialAssignment**
- The sbml model [modelDef_PK_1C_constr_2.txt](https://github.com/AMICI-dev/AMICI/files/15176643/modelDef_PK_1C_constr_2.txt)
When I run:
```…
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Hi,
I'm trying to gauge the general interest in and start a discussion around extracting some of cobrapy's core functionality into a separate package. The goal of the new package would be a faithfu…
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Hello, I have learned a lot from reading your dissertation, but there is a question about memote.
My model version is a bit low and cannot be identified. How can I modify it?
Just like the other two…
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### Title
Physiologically based pharmacokinetic modelling ontology
### Short Description
Ontology aligned for PBPK modelling in life science domain
### Description
The Physiologically-Based Pharm…
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Motivated by https://github.com/AMICI-dev/AMICI/issues/1230
Should be done for both forward and adjoint sensitivities (#18).
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Request a new SBO term to be used for confidence scores.
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Hi, I have a following setup:
- A single model and two experimental conditions - healthy (H) and patient (P)
- The model has 92 parameters and one of them is fixed. And other two are shared among H …
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Hi all,
in the near future I will work a lot with PKPD models, mainly in the context of coupling cellular/tissue/organ models with whole-body models. A first review of existing models showed that mo…