-
I have an issue related to somewhat atypical usage of nanopolish.
I am running nanopolish to call variants on around 500 contigs with sequences from related gene families (obtained through target e…
-
Hi,
Thank you for your work on T2T.YAO genome. But I found the chromosome name (chr1, chr2) in your gff3 file (YAO.hp.v1.1.gff3) don't fit that (GWHDQZI00000001, GWHDQZI00000002) in GWHDQZI0…
-
In the future, I want to map the resequencing data of different species of onto my map genome.Then the group vcf with good classification is used to carry out the process of vgmpmap
I wonder if this …
-
The machine learning classifiers used for taxonomic assignment usually assume that all taxonomies are equally likely (eg. Wang, 2007). That assumption can be relaxed for `q2-feature-classifier`.
To…
-
Dear Creators of the tricky BallerMix+,
I have a question regarding the mysterious column called 'nSites' in the output files of BallerMixPlus, as I could not find any description of that anywhere.…
-
Here's a thought, something that happens often in practice: you're deserializing something that looks like
```json
{"flags": ["foo", "baz"]}
```
into your own bitflags format which looks like
…
-
Thanks a lot for this great tool. I have some puzzles wanting for help
1 Can it be used for somatic
2 can it call EGFR or other genes complex variants
-
Hi and thanks for providing this amazing tool.
I am currently running dada on a set of very deep sequenced samples. Around 3-6M 300bp NextSeq reads per sample remain after filtering.
What i'm cu…
-
Transferred from sars-cov-2-variants/lineage-proposals#955
HK.3.2> C22591T> G1186T, C3425T(Orf1a:P1054S)> C27513T> G22616T(S:A352S), T25159C
Query: C21602A, T25159C, C27513T
Earliest Sequence: …
-
Transferred from sars-cov-2-variants/lineage-proposals#2025
KP.2.3> C28714T> T7438C> T18438C> A25983T(Orf3d-2:K6*)
Query: C8293T, T18438C, A25983T
Query for sequences without T18438C: -T18438C, A25…