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As of right now, there is no way of accessing data contained in `Seurat` assays as new objects without copying, which is a slow and resource-consuming process.
However, if we could create an object …
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Hello!
Thank you for creating SpaCET. I am encountering an error in the deconvolution step:
```
SpaCET_obj do.call ->
```
Also, `convert.Seurat` and `addTo.Seurat` are very useful function…
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Hello,
It seems that scGate is only available to analyse Seurat objects. Is there a way to adapt it for SingleCellExperiment?
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I am building a workflow in Galaxy using scPred and have encountered an issue with the latest version (1.0.2+galaxy0) of the tool ```ScPred feature space```, when running the tool i get the following…
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Hello,
I just noticed that your function `SeuratToExpressionSet()` assumes by default that the Seurat object is of version 2, and that version 3 can be specified by the user.
https://github.co…
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Dear developers of SPATA2,
I am impressed by the convenience of SPATA2 in panning spatial regions of interest and the functionalities it offers!👍
I do have a question though. I've just started to…
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We need to add/review functions needed to import data from Seurat (v3.0) objects.
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Hi SPATA team,
I am learning how to use SPATA and specifically how to plot variables over the sample image. I tried with loading spata object, converting to seurat object and using SpatialDimPlot a…
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I'm not sure if this is a problem necessarily for Seurat or LoomR, but when I try to convert my seurat object to a loom file, I get the following output:
```
Attaching package: 'dplyr'
The foll…
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hello, is there a way to upload a SingleCellExperiment or seurat object with spatial coordinates as input?