-
Hi! I'm brand new to using immunarch and am preparing to use it to analyze some cellranger vdj data from 10x genomics. I was a little confused in the "Loading 10x Genomics Data" vignette, because orig…
-
I rerun the code by cellranger3.01 with eWAT Lin- data. In total, I got 12308 cells, 6246 in the Control and 6206 cells in CL treatment. But in your paper, you just have 9915 cells. Did you filter ag…
-
We have snRNA & snATAC from pooled samples on which we ran vireo; is there a way to determine how consistent the assignments are btw RNA and ATAC?
Thanks you!
-
Dear Author,
1 I firstly used the "TSCAN", howerver, it may take a long time to "read in " the data (10000genes, 3000cells), do you know how long it will take?
2 How long will the the "Granatum" tak…
-
I'm opening this issue to track and discuss how our data structure differs from xarray. Ideally I would close it when AnnData could easily be implemented via xarray.
*Some previous discussion: #308…
-
We'll need to have this in place to more easily showcase the FacileData API.
Some choices could include:
* The [ROSMAP](https://www.synapse.org/#!Synapse:syn3219045) project. This may be ideal s…
-
Hello,
I'm interested in using the bmcite data set as a reference for a study based on human bone marrow samples; so it is important to me to understand how much this data set is representative of…
-
You can propose a blog post on this issue that showcases some functionality or interactivity of the tidyomics ecosystem.
You can tag yourself next to the topic you would like to tackle.
-
Is your dataset not yet in sfaira?
No
Describe the data set
Fill in below:
Link to publication: https://www.nature.com/articles/s41593-021-01005-1
Title of publication: Disentangling glial di…
-
May I ask how to solve this problem?
Error in RunCellQC(srt = seu_obj) :
The db_rate is equal to or greater than 1!