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**Describe the bug**
In snakemake (v8.4.7), "--cluster-status" is not supported, and thus the "cluster-status" in [config.yaml](https://github.com/gbouras13/hybracter/blob/9250ad5a0ed91b04d7976503db8…
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Hello I am trying to run a non-model organism through TOBIAS ...
```
run_info:
organism: insect
```
I have added the genome size to macs
```
macs: "--gsize 222255331 --nomodel --shift…
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Hi,
I have followed the instructions to download and install everything and checked this has worked correctly.
I have had a couple of issues so far and cannot run the pipeline:
Firstly, there …
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I just did a new install of CLAW (and required other packages), and I'm getting an error trying to run the example:
```
#snakemake --profile profiles/slurm --use-conda --keep-going
snakemake: e…
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Hello,
we'd like to plug Fulgor into a workflow that uses Snakemake to install automatically all packages/dependencies from Bioconda.
However, Fulgor doesn't seem to be available on Bioconda, ye…
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The plugin is absent from the plugin catalog page: https://snakemake.github.io/snakemake-plugin-catalog/index.html
Can see there is an error in the nightly github action e.g.:
https://github.com/…
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Hi,
I installed aMeta after reading "Remote providers have been replaced" in the issues folder. Also, the test run worked without any errors. Right now, I am trying to run aMeta using the full nt da…
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How does this compare to snakemake (which I dont [yet] use)?
sje30 updated
3 years ago
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**Software Versions**
snakemake 8.18.2
snakemake-executor-plugin-slurm 0.10.0
snakemake-executor-plugin-slurm-jobstep 0.2.1
slurm 23.02.7
**Describe the bug**
The number of threads speci…
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Dear @johanneskoester,
```
pip install git+https://github.com/snakemake/snakemake
Collecting git+https://github.com/snakemake/snakemake
Cloning https://github.com/snakemake/snakemake to /priva…