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Hi! I have been trying to convert my genind file to hierfstat so I can calculate some population statistics but I keep on getting an error when I run my code. Here's the error:
```
Error in (funct…
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Hello sir,
Sorry to bother you;
I have a question about gemma's theory of analysis. H…
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By run the susie_rss( ) function of a locus GWAS, I have got the result of PIP and cs for each SNP.
1. The serial number of CS is how to order, for example, the 689th SNP in CS 1, whose PIP is 1, b…
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Hello! I hope you are doing well! I am trying to use finngen GWAS summary statistics to run MTAG, but I get this error:
Trait 2: Dropped 64331 SNPs for duplicate values in the "snp_name" column
D…
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Upstream Fedora Change: https://fedoraproject.org/wiki/Changes/ConfidentialVirtHostAMDSEVSNP
Fedora is introducing support for AMD SEV-SNP, which enables Fedora virtualization hosts to launch confi…
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Hi,
Thank you for developing this very useful package. I was trying to run the sampleSwaps command to check whether my bam files belong to the same cases. But while running the command, I encounter…
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# Context
Two colocalisation steps defined in `genetics_etl` are failing to complete when running DAG with eqtlgen credible sets. This is a common problem that happend also multiple times when runnin…
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## Part 1: Bash Script for Bedtools Commands (2.5 pts)
Your script correctly implements the necessary `bedtools` commands for sorting, merging, and subtracting the feature files. The steps for creati…
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Hello,
The analysis completes successfully, no errors, but the snp-dists folder contains only the .txt output
I've attached the snp matrix, heres my execution command, and some version info
`…
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Hello, I would like to study the genetic correlations of several diseases in East Asians, and below is the log file. I am wondering why so many SNPs are being excluded due to valid alleles QC. Could y…