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opentargets
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orchestration
Open Targets pipeline orchestration layer
Apache License 2.0
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feat: changing to 95% file for finngen ingestion
#83
Daniel-Considine
closed
3 hours ago
0
feat(genetics_etl): data freeze 10
#82
project-defiant
opened
4 hours ago
0
Internal data freezes for genetics_etl
#81
project-defiant
opened
1 day ago
0
feat(curation update): genetics curation update 24.11.20
#80
project-defiant
closed
1 day ago
0
fix: adding NOT_QUALIFYING_LD_BLOCK to exclusion
#79
addramir
closed
1 day ago
1
fix: gnomad variant index and ld preprocess
#78
DSuveges
closed
3 days ago
0
chore: request additional vep fields for variant index
#77
DSuveges
closed
4 days ago
0
feat(docs): add command to update the documentation in buckets
#76
project-defiant
closed
4 hours ago
0
chore: drop old dags
#75
project-defiant
closed
1 week ago
0
chore: set `l2g_threshold` to 0.05
#74
ireneisdoomed
closed
1 week ago
0
Credible set pileups
#73
project-defiant
opened
2 weeks ago
1
chore: improve versioning of l2g model in training step
#72
ireneisdoomed
closed
2 weeks ago
0
feat: configuration for etl run with gentropy
#71
project-defiant
closed
2 weeks ago
0
fix: changing to the 99% file and using a different column for fine mapping ingestion
#70
Daniel-Considine
closed
2 weeks ago
0
feat: freeze 6 improvements
#69
project-defiant
closed
2 weeks ago
1
chore: configure hf repo in l2g predicting step
#68
ireneisdoomed
closed
2 weeks ago
0
feat: refactoring vep annotation step
#67
project-defiant
closed
2 weeks ago
0
feat: updating invalid qc reasons for validation
#66
DSuveges
closed
2 weeks ago
1
chore: name l2g run with release id and move download_from_hub param
#65
ireneisdoomed
closed
3 weeks ago
1
feat: add task to genetics etl to generate association data
#64
vivienho
closed
3 weeks ago
0
perf(efm): enhanced flexibility mode in genetics etl cluster
#63
project-defiant
closed
3 weeks ago
1
refactor: reorder tasks in genetics_etl
#62
project-defiant
closed
3 weeks ago
0
fix: prevent code from listing buckets at compile time
#61
project-defiant
closed
3 weeks ago
0
feat(freeze_5): november data release freeze5
#60
project-defiant
closed
3 weeks ago
0
feat(credible set qc dag): added dag and docs
#59
project-defiant
closed
3 weeks ago
0
feat: locus to gene evidence step - polished
#58
DSuveges
closed
1 month ago
0
Improvements of the genetics etl for platform integration
#57
project-defiant
opened
1 month ago
5
fix(vep): change vep outputs extension to `.json`
#56
ireneisdoomed
closed
1 month ago
0
feat(gwas_catalog): sumstat harmonisation dag
#55
project-defiant
opened
1 month ago
0
Investigate LocusBreakerStep performance
#54
project-defiant
opened
1 month ago
0
feat: l2g evidence generation step added to genetics etl
#53
DSuveges
closed
1 month ago
0
feat(add_efo_biosample): add input to orchestration
#52
Tobi1kenobi
closed
1 month ago
0
feat(gwas catalog sumstats): finemapping
#51
project-defiant
closed
4 weeks ago
2
feat(GWAS Catalog sumstat): sumstat clumping DAG
#50
project-defiant
closed
1 month ago
0
chore(eqtl_catalogue): configure step to run on cluster mode
#49
ireneisdoomed
closed
1 month ago
2
feat(susie_finemapper): ensure proper output paths
#48
project-defiant
closed
1 month ago
0
chore(finngen_ingestion): update configuration
#47
project-defiant
closed
1 month ago
0
fix(variant_to_vcf): increase batch job size
#46
project-defiant
closed
1 month ago
0
feat: working genetics_etl including L2G
#45
d0choa
closed
1 month ago
1
chore(finngen): params and documentation update
#44
project-defiant
closed
1 month ago
0
docs: infrastructure blocks
#43
project-defiant
closed
3 weeks ago
0
GWAS Catalog harmonisation of summary statistics
#42
project-defiant
opened
1 month ago
1
chore(eqtl_catalogue): params and documentation update
#41
project-defiant
closed
1 month ago
1
fix(yarn): add dataproc parameter to hydra comamnd parsing function in gentropy step
#40
project-defiant
closed
1 month ago
1
feat(ukb_ppp_eur) dags refactoring
#39
project-defiant
closed
1 month ago
2
fix(vep_operator): change dtype for pos to int for correct sorting
#38
project-defiant
closed
1 month ago
0
chore(l2g): add feature matrix step to the ETL DAG
#37
ireneisdoomed
closed
1 month ago
0
refactor: clarify paths
#36
d0choa
closed
1 month ago
0
feat: gwas_catalog_sumstats_pics DAG and harmonised paths
#35
d0choa
closed
1 month ago
0
refactor(ukb_ppp_eur): ingestion and finemapping
#34
project-defiant
closed
1 month ago
0
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