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Processing of IES candidates in fuzzy mode to get consensus sequence is slow. Speed up with parallelization?
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Add links
- [x] Intro to Primer navigation
- [x] Section 5
- [x] Section 6
- [x] Section 7
- [x] 7-1
- [x] 7-2
- [x] 7-3
- [x] 7-4
- [x] Section 8
- [x] Section 9
- [x] Sect…
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Hello,
I am running `pyrho` v0.1.7 to get recombination rates of hybrid species and their parentals. We are using whole genome resequencing data (vcf files of biallelic SNPs), with 25 individual. T…
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NTR: telomerase complex assembly
descendant of?
GO:0065003 protein-containing complex assembly
I'm not sure if we are adding protein complex assembly terms but there is a big precedent.
The …
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I am looking for "telomeric D-loop" on SO. I found a related term SO:0000297 which refers to the same D-loop (as far as the definition goes and at least structurally). Albeit the SO definition only re…
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Here's a SAM file from `minimap2`'s `lr:hq` mode of a read that can't be injected with `vg inject` into `/private/groups/patenlab/anovak/projects/hprc/lr-giraffe/graphs/hprc-v1.1-mc-chm13.d9.gbz`.
[u…
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It might be useful to represent the HOODs in a browser track:
24. Yamanaka, S. et al. RNAi triggered by specialized machinery silences developmental genes and retrotransposons. Nature 493, 557–…
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Random idea
May need to add linear genome view features to allow plotting features that wrap around the origin and maybe check that adapters can handle that (generally i think it uses coordinates t…
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Hi:
I am studying a non-model diploid mammal species with a large genome size (~6GB). I have 30X Hifi data, as well as Hi-C data from Dovetail Genomics using their Chicago libraries. I have made an a…
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Hello @jhrf, thanks for this piece of software!
I have been running it for a few samples now, but there's one (non-empty, 22KiB BAM file with only telomeric regions from COLO829) which made it cras…