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Here is the command that is run:
```
tophat -p 7 --fusion-search -o SecondTry FusedReference M_05_66.1 M_05_66.2
```
Here is the output:
```
Warning: --fusion-search with Bowtie2 may not wo…
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# This is a Feature Proposal
#### :tophat: Description
Adapt actions to the new convention:
Check how it looks here:
https://meta.decidim.barcelona/processes/roadmap/f/122/proposals/12153
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technically out of source builds are the safer way to do things, but the hardcoded instructions in the makefile are telling it to issue this command: cd ./samtools-0.1.18 && make samtools_0.1.18 && cp…
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We had to wrap custom names in square brackets because our "does assertion name match name in file" logic is brittle. See: https://github.com/tophat/syrupy/pull/563 and related PR.
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It would be nice to have an inspection for missing wildcards in `expand` expressions, e.g.
```Python
expand("{w1}_{w2}", w1="value")
```
should produce a warning because this statement can never s…
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I have got "IndexError: list index out of range" error when I run CIRCexplorer2. I used "fast_circ.py parse -r '/home/jaber/Desktop/volox/ncbi_dataset/data/GCA_000143455.1/genepred.txt' -g '/home/jabe…
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Few issues, some are tool related, but might be global.
**Example tools:** Tophat2 and SAM-to-BAM
**Impact:**
- SAM-to-BAM genome selection can only be done within the editor, manually, without bene…
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I'm finding occurrences of `\t` prefixes in some `Message-Id`'s. Probably best to trim them.
Not sure what other (if any) headers might be effected.
Cheers!
:tophat:
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Hi, I want to do a psf match for sci-images to study color profiles of target galaxies, and I begin my test with psf images.
I use Photutils.create_matching_kernel() to build the kernels first, use w…
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Hi,
do you have any suggestions on how to use disambiguate with Bowtie and Bowtie2?
Thanks
K