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We don't have to reproduce this references. This is a collection of technical visualizations in the field of technical functional genomics.
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Hello!
I am running centrifuge 1.0.4 in a cluster with SLURM, and have installed it according below:
```
wget https://github.com/DaehwanKimLab/centrifuge/archive/refs/heads/master.zip
unzip mast…
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Hi,
Is there a way to request NCBI or Uniprot accessions and/or the functions of the target proteins using foldseek api ?
with the python command : result = get('https://search.foldseek.com/api…
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Hi,
I compared the results that I obtained using vibrant contigs before and after running phamb using checkv
Before
|checkv_quality |n| mean |sum |max|
|---|---|---|---|---|
|Complete |557 |46…
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I'm currently stuck at the gottcha_db.pl part, building a custom database, with the following error:
...
Tues 06/02/2015(15:51:17) ------------------------------------------------------------------
T…
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I'm running metaviral SPAdes with low-complexity (2-5 viruses) samples, and while it successfully works with most of them, three of them are consistently failing without warnings. The logfile reports …
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Hi,
Thank you for developing this cherry_crispr tool for host prediction. My question is about the suitability of the tool. Does cherry_crispr function for integrated viral sequence identified from …
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I don't understand how to set up a configuration file. I need to use the HPV16 virus reference. How can I create a configuration file for that?
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### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above.
Hello,
I'm currently using SPAdes for de novo assembly of a…
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We appear to have an unsolved problem with assemblies that have multiple Covs.
From @rchikhi in an earlier issue: "Among the 10,816 datasets of the master table, 272 (2.4%) of them have CoV contigs…