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Hello,
Thank you very much for writing Stringtie2 - I have been eager to try it out on my ONT cDNA long reads. I have used Minimap2 v2.17 to align reads from 12 samples to the Xenopus tropicalis ge…
knewl updated
3 months ago
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Hi there,
I'm having trouble with installing and running betse 1.4.1. I think it has something to do with the version of python on my WSL (3.10), but I can't figure out how to use a >=3.11. I used …
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I am trying to run the cactus-pangenome algorithm and was able to successfully run on the example data set, however when trying to use a single chromosome of real data with just 2 species the algorith…
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Following the suggestion of @jhpoelen , I'm opening a new issue to discuss the questions about adding taxonomic expertise to the profiles/maps raised by @iimog
"I really like the suggestion to fil…
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http://localhost:8080/api/match/jaccard?id=HP:0007280
```
ontologyUris:
- http://purl.obolibrary.org/obo/hp.owl
ontologyDataUris: []
dataTsvs:
- ./Hs_disease_phenotype.txt
curies:
# …
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python 3.6.4(v3.6.4:d48eceb)[MSC v.1900 64 bit (AMD64)]
Python implementation : C…
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Alongside our quality metrics #64, we want to take some notion of _impact_ into account when for providing our final OBO score #26.
There are basically two elements of raw data available to us to d…
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We need to add
- Xenopus
- Dog
- Cow
- Chicken
- Dictyostelium
- Aspergillus
- Schizosaccharomyces pombe
Extension of [the original STRING issue](https://github.com/monarch-initiative/m…
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In the short term VTO needs updates with new (mainly miniature) taxa.
* Consider adopting OTOL taxonomy (OTT) for updates
* Many taxa are, however, missing from OTT (e.g. no Catalog of Fishes)
* …
hlapp updated
6 years ago
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I used "trinotate_report_summary.pl" to generate a "cXp_summary.html" file, however, this html file shows up blank when opened in Google Chrome or Firefox.
Why?
and, here are the contents of the…
ljyls updated
3 years ago