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**Describe the bug**
The Public Health Alliance for Genomic Epidemiology team is trying out LinkML for describing amplicon scheme specifications. One bug is coming up for them, the serialization of …
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Nick suggests a tiered approach. Ben will do a survey and see how many classifiers there are and whether it could be done.
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Hi there,
I got a bulk rna-seq data of T cells with 10X Single Cell Mouse TCR Amplification Kit. Although it's a weird way to build the library, I still would like to do the analysis. Since the l…
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On Mac, seems to have compiled correctly. But get error on the test data, I don't think it is permissions issue.
```
src/deML -i testData/index.txt -f testData/todemultiplex.fq1.gz -r testData/tod…
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Hi, @etal !
When I run CNVkit pipeline (v0.9.7) in wgs mode to make tumor analysis,
command: `$CNVKIT batch /data/D2288/D2288_t.aligned.bam --normal /data/D2288/D2288_n.aligned.bam --seq-method wg…
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Hi,
Thank you for making a pipeline for nanopore reads analysis.
I have some fasta sequence files from the nanopore sequencer that I want to analyse using the pipeline. I had nanopore amplicons …
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Hello!
Thank you for the tool. I run it with some samples, and the results are promising.
Currently, I am testing this tool for one pipeline that should handle many ONT barcoded samples.
I have alr…
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I am getting the following error when running the get-ncbi-data
This occurs even if I rearrange the order of parameters and outputs, and by changing the query to be enclosed with "" instead of ''. T…
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Hi,
I found a typo in the output VCF that is causing errors when parsing. The AF parameter has NUMBER=1, so it must have exactly 1 entry, but with the recent update of adding af for all alternate all…
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Hi Amrita,
I'm wondering how to apply ONTbarcoder when using degenerate primers. Many samples require that we use **jj** or **jg** versions of LCO-HCO. The widespread Cutadapt tool suppports primer…