-
### Description of the bug
Every time I run kallisto as a subworkflow, it crashes for memory reasons. However, unlike in #38, it crashes at the indexing stage instead of the bustools stage. It seems …
-
## Bug report
### Expected behavior and actual behavior
In the mapping step of nf-core sarek, fastqs should be aligned to a reference genome. This works perfectly with a subset of my sample she…
-
Hi Florent,
I used the script for a new dataset (119 querygenomes) but I got the error shown below.
```sh
sudo python3.8 pipeline/genome2cpAAI.py -q 1/list.txt -p data/protein_sequences_list -o…
-
## **Describe the bug**
I am running caper on a slurm cluster with the --singularity option, and the histone pipeline works fine, but the TF pipeline produces only signal tracks but no peak calls.
…
-
Hi, I was trying to use `woltka classify` with stratification. However, I found that there is a difference between `classify` to a certain level (say 'ko') directly and `classify` at uniref level firs…
-
I got the error information when runing the n-Lo,this log showing in blow:
WARNING: Could not load nf-core/config profiles: https://raw.githubusercontent.com/nf-core/configs/master/nfcore_custom.co…
-
### Description of the bug
Running the test profile (with conda) on the dev branch fails on process MTX_TO_H5AD because files in *Solo/Gene/filtered are not generated by STAR_ALIGN.
### Command used…
-
I've got Single_Copy_Orthologue_Sequences from 3 annotated genomes(**YYL, LBL, HTL**, protein sequences) by using OrthoFinder2. I try to extract OGs from these three and another three genomes by AliBa…
-
In isomiRs, mismatches are much more likely than indels. For this reason, after mapping the reads, if there are multiple alignments of the same read with the same edit distance, we will keep only the …
-
**Submitting author:** @wrightaprilm (April Wright)
**Repository:** https://github.com/wrightaprilm/treesiftr
**Version:** v1.0.0
**Editor:** @juanklopper
**Reviewer:** @ethanwhite, @rachelss
**Archiv…