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Hi @cmdcolin and team-- I'm trying to revamp our genome browser using react, hosted on S3. I've got a valid gff3 that has been sorted and tabixed, but when trying to load in the browser, I'm getting …
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### Sanity checks
- [X] I have searched [github.com/withfig/fig/issues](https://github.com/withfig/fig/issues?q=) and there are no duplicates of my feature
### Feature Details
### Description:
V…
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### Description of the bug
The pipeline fails on the PREPARE_REPEATS:TABIX_TABIX_TBI process. The calculation in the PREPARE_REPEATS subworkflow that works out if `tbi_and_csi` indexing can be used o…
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In attempt to incorporate external annotation, I ran gffcompare with one of the consensus output from CAT.
gffcompare warned that there was a number of redundant features. I pulled one of those ex…
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Based on users' feedback from use of QTL spreadsheet upload, which is now released, and the types of dataset which users are loading and how they wish to use this data Pretzel, this branch will…
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Hello,
I am trying to upload a custom genome to HiGlass, i've been looking at the data preparation for gene annotation uploads but I am confused how to set up the .db file that is produced at the …
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Previously there was a potential 3-BP GJ.1.2/JN.3.2.1 recombinant in #991, and now it gets company in another country.
JN.3.2.1--GJ.1.2--JN.3.2.1--GJ.1.2
Breakpoint 1 between 2940 and 3430
Brea…
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Hello, this is great work and has helped me save a lot of time in identifying seqlet locations in my chrombpnet inputs. For the most part, finemo has been extremely easy to use, but I'm noticing that …
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### Describe the issue
I downloaded the several datasets for finetune and run the corresponding finetune.sh in order to reproduce it. It's OK at the beginning of finetune. BUT when training, it raise…