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I was trying copyVAE on two different datasets to get an idea for its performance and noticed a few small things that I wanted to point out, as potential improvement suggestions or in case someone els…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (option…
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- [x ] I have checked that this issue has not already been reported.
- [ x] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the…
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i am getting many of the "Could not create projection AnnData object from CSV." errors when requesting projections that i have seen already in the past, but which now are returning the error.
for t…
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Follow-on from discussion at https://github.com/single-cell-data/TileDB-SingleCell/pull/25
Some survey data so far:
```
+---------------------------------------+---------------+---------------+…
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Hi,
I am having troubles in using the scanpy.tl.neighbors function on data with more than 2^13=8191 rows while using the "backed" mode.
My machine has ubuntu 18.4, I run the code with a conda en…
sfolk updated
4 years ago
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- [x] I have confirmed this bug exists on the latest version of cell2location. See https://github.com/BayraktarLab/cell2location#installation
- [x] I follow the instructions from the [scvi-tools tuto…
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I send this bug report to main Seurat repository, because SeuratDisk repository does not react to bug reports. Others have reported same bug to there several times.
**Description**
Conversion …
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![scdrs](https://github.com/martinjzhang/scDRS/assets/92795943/570bc966-5493-4646-93ad-5c037f0fd1d2)
when i use the Tcell annot h5ad file, I notice that the name of gene is an ID, such as"0610007c21r…
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The dest_file seems to be hardcoded to the following:
https://github.com/brokamp-group/s3/blob/6aa8253b2fed08dca40ad929b095b977d8cb7623/R/s3_get.R#L33C1-L39C7
```r
dest_file