-
Hi,
Thank you very much for developing this amazing tool!
Recently, I have tried to run hifiasm (v0.16.1) on CCS reads that subsampled to different coverage with rasusa, and noticed that the dif…
-
I tried the program on PacBio hifi reads, which were for amplicon sequencing of some plant DNA samples, barcoded on both ends. The reason is that LIMA generated very simple report missing a lot of inf…
-
Hi, I have a Pi 0W with a HiFiBerry DAC+ Zero. I can't select a soundcard when I run the ./install_hifiberry.sh.
I have also tried
`docker run --device /dev/snd \
-v /var/run/dbus:/var/run/dbu…
-
Dear all,
I have been running hifiasm on two very repetitive genomes (>70% repeat content) using relatively deep HiFi libraries (60x-80x). The results are not that great and the genome assemblies a…
-
Hi, @chhylp123
Thank you for this wonderful tool for genome assembly.
I have used Hifiasm-0.16.1 (r375) for assembling a Arthropoda genome using about 80G HiFi reads(10X).
But I got a abnormal Km…
-
I applied `hifiasm` to create a *de novo* assembly using HiFi reads sequenced from the genome of a diploid human cell line. When I checked the log file (attached), I see only one peak for the homozygo…
-
Hi,
I ran hifiasm in diploid mode with default parameters on a diploid plant genome with Hifi data. Primary and alternate contig size is as expected and almost the same. I have a few large primary …
-
Hello,
I'm using your tool to evaluate assemblies produced with PacBio HiFi reads, 10x reads, and Omni-C reads.
Can you provide descriptions of the expected output columns in the various bed fil…
-
![documentation low](https://user-images.githubusercontent.com/73179468/206028124-6f11f8e9-6653-40cb-8a99-baa05b3efe05.PNG)
![documentation high](https://user-images.githubusercontent.com/73179468/20…
-
I've loaded NextPolish onto a virtual Ubuntu 20.04.2 LTS system and the install seems to have completed without issue, but when I run the test data, I've encountered a traceback error which I'm strug…