-
Some tool choices in RNAseq are a matter preference, in that the evidence is not clear enough to enable an empirically or theoretically motivated choice. However, some things are just demonstrably bad…
-
Hi, I'm just starting to learn to using the PHOTON. I download the phosphoSTY_rudolph.txt and load it into Perseus and follow the Data preparation wokflow.
![image](https://user-images.githubusercon…
-
The current "dev" version of the workflow fails for me on the self-test data. The log output is included below (as part of "pipeline_report.txt") , but the cause of the problem isn't apparent from it.…
-
Hi,
What would be a best way to compute error bars / confidence intervals around the shap values (with focus on main effect values). It might not be possible to estimate it directly, but was wonder…
-
**Commenter Organization:** South Pole
**Commenter:** Maria Fernanda Buitrago
**[2021 Deferred Harvest Methodology](https://github.com/ncx-co/ifm_deferred_harvest/blob/…
-
-
@rochoa @javisantana
Out of curiosity, how are the markers ramped between the min and max sizes for the classed bubble map? Is it just the difference divided by the number of classes?
The most impo…
-
Right now weather is calculated repeatedly each time a simulation is run, even though the answer is the same because the weather doesn't change. Can this be streamlined at all?
@tbarchyn @KeeganSha…
-
Hi
I have a general question pertaining to quantifying QuantSeq data and comparing Salmon vs the alignment methods recommended by Lexogen (Star/Bowtie followed by htseq to get read counts per gene)…
-
Currently if a quantifier "no-shows" (i.e. fails to complete their assignments, is non-responsive to reminders, or responds that they do not have time to complete the work), they must be manually re-a…