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I am running braker2.1.5 in --etpmode --softmasking with rna-seq evidence and orthodb proteins as protein evidence. The run crashes with the following error:
`/bin/sh: 1: [[: not found`
`error: Pr…
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Hello! Thank you for creating this tool.
Upon trying this tool with a repetitive insect assembly (lots of satellite repeats, among others; 71% masked via RepeatModeler + RepeatMasker), this tool fa…
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Hello,
First of all, thank you so much for this set of tools your lab shares. Really valuable.
I'm a "seasoned" molecular biologist, now giving my first few steps on bioinformatics. I've been re…
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**What do you want to know?**
Is there any solution to recover from an unfinished task?
I have killed the previous task by accident and all the output files are stored in the same dir. And I wondere…
BRNiu updated
2 years ago
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Hi,
I installed the docker version as described in the [docker section](https://github.com/TobyBaril/EarlGrey#earl-grey-installation-and-configuration-inside-a-docker-container-if-you-cannot-install-…
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I'm trying to create a SONIC file to run valor2 on 10x linked reads, but I get the following error message when building my SONIC file:
return_value is 0 - sw_score=bit. RepeatMasker .out file has …
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**Are you using the latest release?**
I used `mamba create -n funannotate funannotate` to install and use funannotate 1.8.11.
**Describe the bug**
ERROR: augustus --proteinprofile test failed, li…
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Greetings, I write because I'm having problems with the "Counts" part of the analysis: the " Counts.txt" file contain only the count of totals TE and the "na" ones; the others fields have 0 even if "r…
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Hi again,
I am running the dependency installation and after mamba installs RepeatMasker, it tries to activate the environment but fails to do so as below:
```
Preparing transaction: done
Ver…
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Dear developers
Hello, I'm studying the transposons of Orthoptera insects. I used repeatmodeler to build a self built transposon Library of species, and then used the self built library to annotate…