-
Total reads: 11348918
Skipped reads: 11317525
see also #29 for another LR user where majority of reads are skipped
```IRFinder start: Fri Sep 6 13:58:45 UTC 2024
IRFinder runmode: Long
IRFin…
-
Here is the text for a GitHub issue based on the contents of the provided README file:
---
**Title: Issue with Running Bulk RNA-seq Pipeline on MSU HPCC**
**Description:**
I encountered an i…
-
Hi,
I ran StringTie interactively (qrsh) on the JHPCE cluster and it would create the output directory but hang at that point. When I tried running StringTie via submitted jobs (qsub) the job would f…
-
- [x] Add column to comparison table for number of libraries
- [x] Add DAVID to list (moved MSigDB to "database-specific" bullet point since we describe it in terms of a data source more than the act…
-
Data integration work from the ADC is being performed under the https://github.com/airr-knowledge/ak-schema/tree/airr-export branch.
Particular code for converting data from the ADC into the AKC is…
-
Experiment Type:
RNA-Seq
Sequencing of total cellular RNA
Workflow Management:
Bash/SLURM
Scripting and job scheduling
Software Stack:
FastQC
MultiQC
STAR
RSEM
samtools
DESeq2
What …
-
Hi all,
First of all, thank you for making such a great tool. I have a question regarding the differences in mapping rates when using different indexing methods in salmon. I have a paired end RNA-…
-
Subscribe to this issue to receive updates about Brewsci/bio.
-
https://mp.weixin.qq.com/s/5kwfiapfBKVSQmo5Zuh6EA
-
18/1 2023 9.00 - 10:30 link: https://ki-se.zoom.us/j/67694776153?pwd=eHFYK3RZUWtiQXRrVklFMUdkZS9JUT09
# Update highlights
[Since 4.59, GMCK-RD theme day 2022-09-28]
- ClinVar submission
- Ph…