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Hi all and thanks for your work. According to the documentation, "The first step in any Tombo analysis is to re-squiggle (raw signal to reference sequence alignment) raw nanopore reads. This creates a…
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Coronaspades' gene_clusters file are here: `s3://serratus-public/assemblies/dicistro/gene_clusters/`
Other coronaspades files: `s3://serratus-public/assemblies/dicistro/other/`
4921 assemblies mad…
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TYGS is _the_ go-to classification server, but its turnaround time - especially under load - is a bit slow for the workshop.
The current placement in the workshop is late on because we build concep…
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### Initial Checks
- [X] I confirm that I'm using Pydantic V2
### Description
When a field is declared as Iterable, the field in the instances is replaced by `ValidatorIterator`. I understand…
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## Use case
There are cases where the analyst wants to set a specific note or several at the top of the entity.
An analyst team where each one works with different parts of an analysis or data c…
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# Todo
https://github.com/OCA/maintainer-tools/wiki/Migration-to-version-16.0
# Modules to migrate
- [x] attachment_unindex_content - By @Rodrigosu-Vauxoo - #2563
- [x] auditlog - By @Stefan…
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I am trying to analyse mutational data (aligned to GRCh38) and the code is here -
```
MutSpot(run.to=4.2, snv.mutations=baseline_maf, genome.build="Ch38",
cores = 2, cutoff.nucleotid…
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Hi,
I am comparing clustering results from CD-HIT and RapClust. One of the characteristics of CD-HIT is that it selects one representative transcript per cluster, while rapclust doesn't. Would it be …
mpaya updated
6 years ago
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A sequence of events occurring out of order can cause two Augur features to add a renamed repository in addition to the originally named repository. After significant investigation on our largest inst…
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Hi,
I am trying to run celescope. I built the reference genome and I have created the shell scripts, but I obtain this error:
sh Bnsortednuclei1.sh
2024-05-14 14:13:14,148 - celescope.tools.…