-
Hi there - I'm having some problems running `HaplotypeCallerSpark` on RNA-Seq data.
The tl;dr is that, on some occasions when `HaplotypeCallerSpark` runs out of memory, it finishes successfully, b…
-
-
Hello I am trying to write out GT and PL fields for haploid samples. In the header PL must have Number = G. However, even though my GT is either (0,) or (1,) I get this error: _**TypeError: values exp…
-
Hi I'm getting this error on testdata in a dev version of fieldbioinformatics with clair3 called data (attached), I've confirmed that this occurs with version 0.4.5 and 1.0.0 full traceback below.
…
-
I got all results but .vcf file. see below error. please help.
File "/mtoolbox/1.2.1/MToolBox/mtVariantCaller.py", line 913, in VCFoutput
i._sample_indexes[sample][0].append(genotype)
Attr…
-
I am getting this error! what could be the reason?
-
Dear authors,
I have read your paper and want to detect the cross sample contamination. But the description of this software is poor. Can you make it clear and write a turuor please.
Best,
Lian…
-
### Description of the bug
I've mentioned this before, but I don't think vcf-to-tab from VCFtools was designed to work with Graphtyper-formatted vcf files.
It works ok when dealing with haploid…
-
Hello, I sorted the following vcf file using sort_vcf_same_as_bam.sh but still I got the following error. I did not filter the vcf file after the download.
**The code:**
wget http://ftp.1000genome…
-
### Code of Conduct
- [X] I have read and agree to the [Code of Conduct](https://github.com/vmware/terraform-provider-vcf/blob/main/CODE_OF_CONDUCT.md).
- [X] Vote on this issue by adding a 👍 [reacti…