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Illumina
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REViewer
A tool for visualizing alignments of reads in regions containing tandem repeats
GNU General Public License v3.0
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Interpretation issue
#67
esthernmolina
opened
3 weeks ago
1
getting Error for --locus [[2024-03-26 12:32:51.907] [error] Error loading locus ATN1: Locus ATN1 must specify reference regions for 1 variants]
#66
Arth032
opened
3 months ago
0
Invalid contig name for alternate contigs
#65
maxmilianr
opened
6 months ago
0
Complilation error
#64
ysayyed11
opened
6 months ago
2
[error] Failed to extract reads from the specified region
#63
Tintest
closed
9 months ago
2
Diplotype score in phasing.tsv
#62
hopedisastro
opened
1 year ago
0
(add) create dockerfile for the tool
#61
geocarvalho
opened
1 year ago
0
Error fix
#60
gokudousan
opened
1 year ago
0
metrics.tsv AlleleDepth of head and v0.2.7 deviate significant
#59
maarten-k
closed
1 year ago
1
[E::bgzf_read_block] Invalid BGZF header at offset 590043
#58
Tine-dk
opened
1 year ago
0
Issues building from source with cmake
#57
sheinasim
opened
1 year ago
5
Allow compressed VCFs
#56
dnil
opened
1 year ago
0
Repeat units differ significantly in VCF and SVG
#55
marc-sturm
closed
1 year ago
2
[error] No VCF record for C9ORF72
#54
mital14
opened
1 year ago
4
unable to find the compatible libcurl4
#53
mital14
closed
1 year ago
1
Process all loci in variant catalog if --locus arg not specified
#52
bw2
opened
2 years ago
0
Remove error about N's in the reference context.
#51
bw2
closed
2 years ago
2
BAM alignments are required to have "XG" auxiliary tag
#50
rxw125
opened
2 years ago
0
Rng seed
#49
sclamons
closed
2 years ago
0
Error handling and warning for unsupported loci with small variants.
#48
sclamons
closed
2 years ago
0
[error] Failed to extract reads from the specified region
#47
Jolleboll
closed
2 years ago
5
Attempting to run REViewer on ExpansionHunter's example data gives assertion failure
#46
Jolleboll
closed
2 years ago
2
fix gcc 11 build break
#45
fo40225
closed
6 months ago
0
Unable to create path
#44
deepseq
opened
2 years ago
4
"Missing flanking read fragments"
#43
hchetia
opened
2 years ago
2
Strand bias (QC metric) in REViewer
#42
mdanzi
opened
2 years ago
0
Add metrics docs
#41
egor-dolzhenko
closed
2 years ago
0
Report metrics and phasing information
#40
egor-dolzhenko
closed
2 years ago
4
Remove fmt library requirement
#39
egor-dolzhenko
closed
2 years ago
0
Output metrics to a single file
#38
egor-dolzhenko
closed
2 years ago
1
Allelic Depth (QC metrics) in REViewer
#37
a7420174
opened
2 years ago
7
JSON metrics output
#36
egor-dolzhenko
closed
2 years ago
4
Error out when no alignments remain after clipping
#35
egor-dolzhenko
closed
2 years ago
0
Build fails due to fmt
#34
robertzeibich
opened
2 years ago
6
Ambiguous code vis
#33
sclamons
closed
2 years ago
0
Allele depth
#32
egor-dolzhenko
closed
2 years ago
1
Regression tests + .gitignore
#31
sclamons
closed
2 years ago
1
Add SNP calling workflow placeholder
#30
egor-dolzhenko
closed
2 years ago
2
Code cleanup
#29
egor-dolzhenko
closed
2 years ago
0
Segmentation fault (core dumped)
#28
hchetia
closed
2 years ago
3
Graph Interpretation
#27
hchetia
closed
2 years ago
8
option to display confidence intervals in image
#26
bw2
opened
2 years ago
1
Option to show which read bases align to N's or IUPAC bases within repeat unit
#25
bw2
opened
2 years ago
0
Transfer build changes from EH
#24
ctsa
closed
2 years ago
0
Region extension length
#23
egor-dolzhenko
closed
2 years ago
0
Display degenerate base pairs
#22
mfbennett
opened
2 years ago
1
Bamlet generation for Reviewer viewing
#21
hchetia
closed
2 years ago
3
Installation error
#20
hchetia
closed
2 years ago
6
Repeat-size interval visualisation
#19
kibanez
opened
3 years ago
0
CMakeLists.txt file has the wrong n old download link for Boost app
#18
katerinaoleynikova
closed
3 years ago
1
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