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I have been using mitochondrial annotation to teach prokka to a master class very successfully for the last few years - the mtDNA annotates very successfully and very fast so that the students can see…
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Hey there,
I've been testing some PLASS assemblies with my datasets and I noticed that it retrieves ~50x times more proteins than my MEGAHIT+Prodigal predictions, which is way more than what is sho…
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Hi,
I am currently trying to convert a gtf or gff3 file output from Augustus to a format that will be read by PASA. However, when I try to run this command:
convert_augustus_to_gff3.py -i august…
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Hi. I got the following errors in the quantification step.
> IRFinder-1.2.5/bin/IRFinder: line 562: 49201 Broken pipe gzip -cd "$1"
49202 Aborted (core dumped) | "…
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From the Handbook:
https://www.ncbi.nlm.nih.gov/books/NBK53714/#gbankquickstart.i_have_viral_sequence_da
- [ ] CDS feature(s) with product name(s), nucleotide locations, and amino acid translation…
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Good morning,
I'm currently facing an issue with your program. I've managed to install it successfully, but when using my own data, I'm encountering some problems. The error message I'm encounterin…
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Is it possible to use PhyloCSF on mitochondrial genomes, i.e. with an alternative genetic code?
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# **OrthoFinder version 2.5.4 installed by conda:**
```
$ orthofinder -f rep_type_out_more_genomes_faa -M msa -S mmseqs -a 10 -o rep_type_out_more_genomes_faa_orthofinder_test
OrthoFinder versi…
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Please add Windows prebuilt binaries
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Hi
How FATE decide the biotype of each hit?
I could not find the description of the criteria for "blue/yellow/red" in the 9th column.