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Hello,
I am using Nanocount to estimate expression levels. I found that Flair quantifies the transcripts after finding novel ones. Is it sufficient to accept the results of Flair quantify or is it …
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Hi Authors,
I ran TOGA with following command: `./toga.py /home/vlamba/New-gene-Noto/DisMaw-to-CotGob.chain /home/vlamba/12_GCF_900634415.1_fCotGob3.1.ensGene.bed /home/vlamba/New-gene-Noto/CotGob.2b…
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Dear Flair developer,
I am using Flair for our transcriptome analysis and the data we got are sequenced on Promethion 24 with one flowcell. For this run, we get about 80million reads. After I run f…
wuy24 updated
10 months ago
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Analysis to understand "spuriousness" with respect to exon use suggested by Sam Bogan. Could we replicate this with our transcription data for each sex independently to look at treatment effects on ex…
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Command:
python3 flair-2.0.0/flair.py diffSplice -q quantify.tsv -i all.isoforms.bed -o final_diff -of
**How did you install Flair?**
2. `docker pull brookslab/flair:latest`
**What happene…
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Hi,
I'm new to the `oncokb-annotator` and I'm a bit confused by the sentence in your README file that says "We recommend processing VCF files by vcf2maf with OncoKB™ isoforms." Could you please cla…
Teezi updated
10 months ago
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Hi @kirilenkobm
I tried to run the `TOGA_assemblyStats.py` using this command: `./TOGA_assemblyStats.py /home/vlamba/toga_dir_names.txt -m stats` the txt file `toga_dir_names.txt` have the full pa…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Have you loaded the SQANTI3.env conda environment?
- [X] I have loaded the SQANTI3.env conda environment…
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### Operating System
Other Linux (please specify below)
### Other Linux
Rocky 8
### Workflow Version
v0.4.1
### Workflow Execution
Command line
### EPI2ME Version
v0.4.1
### CLI command run…
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It turned out to be error:
.bam does not exist!
I run the command and the bam file in the same folder, it cannot find it. How to solve this problem?
Thank you!