issues
search
WGLab
/
LIQA
Long-read Isoform Quantification and Analysis
Other
37
stars
12
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
about gcmr
#44
border-info-nt
closed
2 weeks ago
7
Understanding novel mode outputs
#43
spvensko
closed
1 month ago
2
Issue with novel mode output header
#42
spvensko
closed
1 month ago
1
how to calculate TPM
#41
tebioinformatics
closed
1 month ago
1
Unable to see refgene output
#40
sparthib
closed
3 months ago
1
Does Liqa -task diff perform FDR correction?
#39
benpiticaru
closed
3 months ago
1
Issue with DAS estimation and output
#38
JesusMHU
closed
3 months ago
2
Installing LIQA
#37
dvirdi01
closed
3 months ago
2
Out of memory problem
#36
sonyuna90
closed
3 months ago
1
sh: Rscript: command not found when I tried with -task diff
#35
sonyuna90
closed
11 months ago
0
Novel isoform detection
#34
AlinaO90
closed
3 months ago
2
Invalid literal for int()
#33
lkmack21
closed
1 year ago
0
Liqa, DAS: Error in optim(start, fn.opt, method = method, control = control) : non-finite value supplied by optim
#32
sigusn
closed
3 months ago
2
version
#31
whatabear
closed
3 months ago
1
Should not use gene name as key
#30
baraaorabi
closed
3 months ago
0
Added arg to set min iso per gene
#29
baraaorabi
closed
1 year ago
0
Added multiprocessing to quantify.py
#28
baraaorabi
closed
1 year ago
0
reproduce figure 6 in your manuscript
#27
HaojiaWu
closed
1 year ago
5
remove -F 2308 part in reads filtering
#26
MingyiXia9717
closed
1 year ago
0
what is ReadPerGene_corrected?
#25
zhanglab2008
closed
1 year ago
1
fastq file to bam file
#24
zhanglab2008
closed
1 year ago
5
LIQA quantify crashes with newest version of lifelines and -f_weight 0
#23
jpfry327
closed
3 months ago
1
Output issue
#22
FarmOmics
closed
3 months ago
3
Estimation of read length survival function
#21
rob-p
closed
3 months ago
1
Problem in finding GCMR packages
#20
shafijcsmr
closed
3 months ago
3
Detecting Alternative Splicing events Error.
#19
allapadma
closed
3 months ago
2
DAS Error.
#18
benpiticaru
closed
3 months ago
2
Execution halted: detecting differential isoform
#17
allapadma
closed
2 years ago
1
Sorted and indexed bam file error
#16
allapadma
closed
2 years ago
0
single isoform genes are excluded
#15
nhartwic
closed
3 months ago
10
"liqa -task refgene" but there are no result
#14
JD12138
closed
3 months ago
5
Output file explanation
#13
gmoneyomics
closed
3 months ago
1
option for parallel processing
#12
Akanksha2511
closed
3 months ago
2
output explanation
#11
Akanksha2511
closed
3 months ago
5
could not find bam file
#10
Cristinex
closed
3 months ago
5
installation problem
#9
Cristinex
closed
2 years ago
0
ValueError: invalid contig while quantifying isoform expression
#8
saifashraf
closed
3 months ago
5
assign reads to transcript
#7
enovoa
closed
3 months ago
3
ValueError: invalid coordinates: start (10589) > stop (9435)
#6
hmutpw
closed
2 years ago
4
R error when detecting DAS genes
#5
asethi-1
closed
3 months ago
27
Quantify error
#4
JesseBNL
closed
3 months ago
3
High abundance but no reads
#3
mei-du
closed
3 months ago
5
Novel isoforms
#2
mei-du
closed
3 years ago
1
Error in quantifying isoform expression
#1
maxh190
closed
3 months ago
8