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Hi,
I am trying to use piRNN, but it is hard to overcome so many errors due to the incompatible needed packages. I hope to know the version of the packages that is suitable to the scripts.
Than…
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### Is your feature related to a problem?
Some reads are inevitably thrown out due to lack of barcode, basecalling errors/below Qscore threshold, etc.
### Describe the solution you'd like
If you ha…
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Hi,
I've noticed that MOODS uses a slightly different formula for the log-odds calculation than what BioPython uses, which leads to a different output.
Biopython uses an "intuitive" algorithm, t…
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I have a whole genome em-seq methylation library with dual indexes as well as methylated UMI's at the beginning of each R1 and R2. These are from Twist and were used to make EM-seq libraries. I am not…
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I believe recombination events can be detected by sliding a window down a genome (or contig) to find the most similar known genomes for each window. Discontinuities in this list of top hits and their …
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Hello there!
I'm creating some Jupyter Notebooks for MGnify team to show examples of how to use the tool and I learned that the tool is filtering out samples during the phyloseq object building step.…
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XDV.1.9+G4255A, del21650_21655, T21656A (S:N30-, S31-,F32I)
GISAID query: G4255A,C6855T,T22930A
No. of seqs: 9(China 6 Japan 1 USA 1 New Zealand 1 )
GISAID query for S:A435S sub-branch: G4255A,C6…
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Hi, thanks for developing this awesome tool!
For PE trimming, it would be extremely helpful to use an adapter trimming mode based on read1/read2 alignment, as opposed to separate alignment of the a…
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please
- add a new script `check-verified-targets` to the `bin` folder
which should
- take the path to the verified-targets.tsv file from input
- take the `input` folder (with sequence fasta dat…
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