-
I am currently working with single cell data from human and zebrafish both from brain tissue!
My assignment is to integrate them! So the steps I have followed until now :
1. Find human orthologs f…
-
Hi, I have freshly installed funannotate through conda, then removed augustus by using "conda remove --force-remove augustus". After that I locally installed augustus 3.3 through apt-get and redirecte…
-
HI,
I am working on pangenome analysis of Lactobacillus species, where i am comparing genome of chromosomes with the plasmid genome. I have pulled all the CDSs associated with chromosomes for all t…
-
Hi @Cantalapiedra ,
I recently meet a strange problem. In short, when too many protein sequences are used (= 500), errors will occur, while when there are few protein sequences (= 50), the code wi…
-
I think I need a new GO MF term for an activity of Tdp1 (S. pombe and some orthologs). If one exists already I haven't found it. I've also become a bit confused reading up on it, so it would probably …
mah11 updated
2 years ago
-
This gene page has an ortholog section but "Orthologs" doesn't appear in the left hand menu:
https://www.pombase.org/gene/SPNCRNA.128
This one has a truncated ortholog section: https://www.pombase…
-
Typos in the species distribution CV annotations need to be logged.
We'll need to configure a list of the valid term names. Here's a list of the current number of terms each term name is used in a…
-
Hi,
it might be worth to re-enable the `human.ortho` argument of `make.projection()`. Currently, the value of this argument is ignored, since [projection.helper()](https://github.com/carmonalab/Pro…
-
Hi, Thanks for the nice package.
I usually use the blast function giving two Genome file of 2 organism in fasta format and run the command. Here is the command:
>blast(query_file = "/path/to/B…
-
Hi @Cantalapiedra,
I am trying to annotate my own-assblemed fungus genome by using eggnog-mapper tool.
However,I get something wrong throught command belows.
`emapper.py -i ../GL.pp.fa -o GL --us…