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I want to use flye using Nanopore results. My sample contains plasmid. However, currently Flye does not allow --plasmid, so a problem arises where the plasmid sequence is merged with the chromosome …
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flye supports two flags (`--plasmid` and `--meta`) that aren't directly exposed in dragonflye. Use dragonflye's `--opts` flag to optionally pass them through.
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**What is the Feature Related To? Please Provide a Description.**
Add access to additional bakta parameters at runtime:
--complete
--compliant
--gram
--keep-contig-headers
--skip-gap
…
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... we might need to optimise how we get blackhole plasmids
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### Describe your feature request precisely
Hi everyone,
I am working with elab everyday and on all my devices. And the cool thing is that the elab design is really responsive. There is just one s…
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Hi @ctb, I have been using Sourmash for a while in a metagenomic context - its honestly an amazing package that changed the way much of the field does taxonomic annotation. However, there is one featu…
ursky updated
7 months ago
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### Introduction
Hi everyone, I am Iris. I'm doing my PhD at the Applied Sciences Faculty, in the Biotechnology Department.
### Describe your research in 2-3 sentences to someone that is …
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Hello,
Can I use the pcr.seqs command to isolate my PCR insert from the plasmid vector? I see that it has the option to trim up to a certain point and trim from a certain point. Can I use pcr.seqs to…
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This Category is related to configuration. Here there are 3 variations with colors
- plasmids
- proteins
- mrna
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Hi,
I installed Bakta recently using mamba.
I downloaded the DB using the built-in command.
I am trying to run mamba on a series of fasta files:
for f in *fasta
do
sample=${f//.fasta/}
…