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Hi everyone !
Is it somehow possible to remove the protein groups identified by less than 2 peptides? Or what is the algorithm in DIA-NN for this?
I don't see any columns in "report.pg_matrix" o…
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Opening an issue to plan the integration.
Inviting comment from @leicray @John-F-Wagstaff @ifokkema.
Note. I will be starting this process next week (22nd/23rd March) and will use this issue to…
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This is part of my crusade against API consumption of `Topology` :stuck_out_tongue:
Would it be crazy to refactor the parts of `from_smirnoff` that apply the force field out into an `parametrize_s…
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Hi @kltm
The 'ultimate' goal is to have all Swiss-Prot (reviewed) entries. The file is in the same GOA ftp, it's called
uniprot_reviewed.gpi.gz
The bacteria and viruses file was to test a sma…
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Hello, I'm in a team that's trying to use your saguaro-3d app to display papillomavirus protein structures along with some pairwise alignments and other associated data. We found this project when re…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/lptolik/BioNAR
Confirm the following by editing e…
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Very excited to see BERN2! Really nice work so far.
I'm looking to map certain mentions of proteins to standard identifiers. Here's a list of these proteins, where each protein is also followed by …
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Hi,
I am having some issues looking through `test_sets_pdb`:
original (undocked) structures are in: `db5_test_random_transform` with ligands (part that moves) being in `random_transformed`, rec…
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**Submitting author:** @Xia-Yijie (义杰 夏)
**Repository:** https://github.com/Xia-Yijie/Xponge
**Branch with paper.md** (empty if default branch):
**Version:** v1.2.6.8
**Editor:** @richardjgowers
**Re…
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Hi Sebastian,
Is it possible to implement another significant cutoff other than the ones available? It is called Xiao correction. Here is the link to the paper.
https://www.ncbi.nlm.nih.gov/pmc/ar…