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I try to run the example of weighted_unifrac from the docs: http://scikit-bio.org/docs/0.5.5/generated/skbio.diversity.beta.weighted_unifrac.html
```
from io import StringIO
from skbio.tree impor…
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Dear all,
I would appreciate if you could format the database to use in DADA2/phyloseq pipeline please?
https://benjjneb.github.io/dada2/training.html
Thank you
All the Best,
Polyana
…
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## 🐛 Bug
### To Reproduce
Steps to reproduce the behavior (**always include the command you ran**):
I got this error when I try to evaluate a trained non-autoregressive MT model.
```ba…
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Dear all,
First of all, I am really fond of the approach developed by Songbird for differential abundance analysis: it would be perfect for my needs.
I have a couple of questions about its correct u…
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next steps: pick the best two examples for the comparing to the null distribution
treat nutrients as species, and species as communities of nutrients, so to get a different FDiv value for each specie…
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# Notary Application
To apply as a notary, please fill out the following form.
## Core Information
- Name: Philipp Banhardt
- (Optional) Affiliated Organization: Filecoin Foundation
- Websit…
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Hi,
Not sure exactly what to set as title for this issue, but I'll try to describe my problem as best I can here:
1. I've created a `skbio.TreeNode` using `TreeNode.from_taxonomy()`, and that wo…
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This is a tracking issue for the process of updating the TVM ci- containers to reflect the following PRs:
#8169
Steps:
- [x] Pick the latest revision of main and use that specific git hash for…
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We discussed researching and documenting this topic in 2021 strategy session. We want to create a definition of Open Leadership as we did for Open Principles. Other issues to be filed :)
- What is "o…
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**Improvement Description**
The following Actions should be made into Pipelines, dependent on Actions from `q2-diversity-lib`:
- `alpha`
- `alpha phylogenetic`
- `beta`
- `beta phylogenetic`
`…