-
Hello,
Very cool package/paper!
I know this package was written with the goal of deconvoluting bulk RNA-seq data in mind. However, I was wondering if it could be applied to proteomic datasets …
-
Hi Tao,
Yes Thursday (tomorrow) at 5pm works. Will you send a Zoom invite?
Best
Dalila
-
### project short name
DevelopingImmuneSystem
### Primary wrangler
Ami
### Secondary wrangler
Ida
### Ingest
https://contribute.data.humancellatlas.org/projects/detail?uuid=fcaa53cd-ba57-…
-
Hi! Really cool method!
I was wondering whether your package would support bulk RNA-seq? And nanopore-based (i.e. not Illumina short) reads? Is support for other genomes (e.g. other mammalians) eas…
-
**Describe the bug**
A clear and concise description of what the bug is.
The staging instance of the [HTAN Data Curator App](https://sagebio.shinyapps.io/HTAN-data-curator-staging/) crashes with t…
-
Hi,
I am new to this tool,
First question:
wanted to check if I can use it for bulk data of RNA-seq
Second question:
can I use for the annotation file any genome of interest (not only huma…
-
Hi,
I have questions about reference data. In tutorial , the reference dataset `yan` is normalized by FPKM. So , whether the input must be `FPKM` ?
What about raw counts of bulk RNA-seq data, scRNA-…
-
https://mp.weixin.qq.com/s/EgGGxVZM054sqD4hnmaMbw
-
Looks like there has been some progress (including changes to the CLI) since the latest release. Do you plan to create a new release? I'd like to install a newer version to support users on our syst…
-
Hi
`RcisTarget` is a very useful software for transcription factor analysis!
I found the input of `RcisTarget` is GeneList, so perhaps I can apply the software for DEGs in my bulk RNA-seq data…