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New lineage proposal
by @CorneliusRoemer
Description
Sub-lineage of: B.1.617.2
Earliest sequence: May 2021 (South Africa)
Most recent sequence: Current
Countries circulating: Mostly South Afri…
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Find identical structures like this:
![image](https://user-images.githubusercontent.com/112708/129614400-fb7ce872-5cf0-4f83-9e76-0adf1a8a7a4f.png)
in the ETE-parsed version of the parsimony tree…
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Dear developer,
I was trying to install Repeastmasker (current latest version 4.1.2) on both Mac (macOS 11.6 Big Sur on Intel) or linux RedHat server, but I was stuck at the same error message, pos…
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**Proposed sublineage 1**
**Description**
**Sub-lineage of**: AY.4 (1202 sequences)
**Earliest sequence**: 2021/3/19(Slovakia)
**Most recent sequence**: 2021/10/1 (the UK)
**Countries circulating…
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Sub-lineage of B.1.617.2
Countries circulating: Multiple countries including Netherlands, Bulgaria, Maldives, Italy, Germany, United Kingdom, USA, Turkey, Spain, Czech
The C23277T (S:T572I) branch…
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Hi! I am trying to use TreeViewer and have a question on color shades on clusters.
Are there any modules that can draw color shades (or big "blocks") onto taxa or monophyletic clades? Which I mean is…
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@Coolthulhu, could you give me your opinion on reworking mutation categories? I'm working on a rather big mutation rebalance and would like to you know if you are interested in such a thing for Bright…
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By Anderson Brito (Instituto Todos pela Saúde, ITpS)
**Description**: Sub-lineages of B.1.617.2 (Delta) in circulation in Brazil. These sub-lineages belong to a large clade, currently assigned to m…
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Hi,
I have to download specific bacterial genomes from JGI. Is there a way to download them in bulk through their submission IDs via jgi-query?
Thanks,
Marco
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Hello!
Thanks for all your work developing this great tool! I've been testing V4 and noticed that when I give pangolin V4 a short sequence it gets filtered out at the preprocessing `align_to_refere…