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Dear all,
I understand the `dreamlet::fitVarPart()` is internally using the **variancePartition package**, which uses linear and linear mixed models to quantify the contribution of multiple sources…
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Hello! Thank you for the development and maintenance of this project!
When using `fgsea` function I got a warning:
```
In fgseaMultilevel(...) :
There were 1 pathways for which P-values we…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/baerlachlan/darr
Confirm the following by editing…
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### Ask away!
I am using wf-transcriptomes workflow for analysis my ONT pilote transcriptome data which is from only 1cDNA library. After I run the following command, the result I got are the html re…
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Hi @dbdimitrov,
this is to follow up our discussion on methods for differential cell2cell communication in https://github.com/theislab/single-cell-best-practices/pull/140.
In your NatComm pape…
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https://mp.weixin.qq.com/s/DfaHcAOm9UtfonbxXRHqiQ
ixxmu updated
9 months ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/imbeimainz/mosdef
Confirm the following by editin…
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**Question**
First of all, thank you for this wonderful tutorial! It has been immensely helpful in dealing with single-cell datasets, and I've gained valuable insights from it.
I've been struggl…
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After running `rank_genes_groups` with 100 genes and 30 clusters, the `adata.uns['rank_genes_groups']['pvals_adj']` results in a `100x30` array of p-values. Each column is a cluster, so the first row …
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Hello, I am following the procedure.
Example workflow for denovo transcript assembly
OUTPUT=~/output
nextflow run . --fastq test_data/fastq \
--denovo \
--ref_genome test_data/SIRV_1506…