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Hi,
is the plug'n play variant of the library available for gencode v44 somewhere or is a manual build the only alternative?
thanks
koen.
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I was wondering if anyone had the opportunity to test parameters for computing ANI between viral genomes.
I guess that the defaults of fragment length of 3000 and minimal number of fragments of 50 i…
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First, a suggestion: It would be very helpful to be able to turn off the screen output. We use fastANI with a single query genome against a long list (thousands) of reference genomes (--refList option…
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HI,
is there a way to call peaks genome-wide instead of the chromosome by chromosome? I guess I could make multiple chrxx_chrxx.txt files, and then concatenate all the calls, but i was hoping there w…
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Hi Developer,
Thank you for developing this good tool.
Is it possible to use purge_dups to get the best set of contigs from two different assembler?
For example, I got draft genomes of the same org…
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Q: How many sourmash hashes does it take to classify a genome uniquely?
If the answer is 1, then there is a single hash that identifies this specific genome! :tada:
If the answer is “you cannot…
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Hello, I have a bam file where my reads are aligned to the `GENCODE GRCh38.p14.genome.fa file`.
The corresponding gtf file is `gencode.v44.chr_patch_hapl_scaff.annotation.gtf`
I tried running BAM…
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Dear Tobias,
I hope this message finds you well.
I am currently engaged in a project that involves tracking the insertion sites of a transgene in the mouse genome. The transgene in question is ap…
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Thank you for this helpful package. I noticed that the package has a fairly strong integration with `GenomeInfoDb`.
(From the perspective of Bioconductor data structure integration that's great.)
Bu…
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Really like your paper related to this code (Deep learning-based identification of genetic variants: application to Alzheimer’s disease classification) and am interested in trying something similar on…