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ParBLiSS
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FastANI
Fast Whole-Genome Similarity (ANI) Estimation
Apache License 2.0
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Clarify threading works at reference genome level
#140
peterjc
opened
1 week ago
0
When omp.h isn't available the build still uses it
#139
yurivict
opened
1 week ago
2
6 tests failed
#138
yurivict
opened
1 month ago
0
Tests fail to compile: error: use of undeclared identifier 'unlink'
#137
yurivict
opened
1 month ago
0
fastANI ANI of > 95% between known distinct species
#136
ERBringHorvath
opened
3 months ago
0
fastani version issue
#135
topkent
opened
4 months ago
0
Windows release
#134
fluhus
opened
5 months ago
0
fastANI's .visualize output for small sequences
#133
sinamajidian
opened
5 months ago
0
Sequences don't fully match themselves
#132
fluhus
opened
5 months ago
1
Cannot install fastANI on MAC
#131
francescodc87
opened
7 months ago
2
Error in CMakeLists.txt
#130
lokyimandy
opened
8 months ago
7
VRE
#129
CandyWan333
opened
10 months ago
0
corrected ANI using orthoANI_usearch/blastn
#128
jianshu93
opened
10 months ago
1
[Feature Request] Many-vs-Many upper triangle of pairwise genome ANI calculation
#127
jolespin
opened
11 months ago
3
The result of FastANI was different with Nucmer
#126
YouxinZhao
opened
11 months ago
1
error with libgsl.so.25 when bioconda package specifies gsl version 2.7
#125
Tony-xy-Liu
opened
1 year ago
2
Segmentation Fault in fastANI
#124
kevinmyers
closed
9 months ago
2
Multi-genome reference and query FASTAs for many-to-many queries
#123
ryneches
opened
1 year ago
0
How does fastANI handle Ns?
#122
krausfeldtle
opened
1 year ago
0
Cleanup more un-needed files generated during the build
#121
nileshpatra
opened
1 year ago
0
include <algorithm> in fastani_tests.cpp
#120
douglasgscofield
closed
1 year ago
1
Ctest failing while building with cmake
#119
kbipinkumar
opened
1 year ago
1
Refactor and update documentation
#118
srirampc
closed
1 year ago
0
--minFrag
#117
liushuqing506
opened
1 year ago
1
Threads not being utilised?
#116
bananabenana
closed
1 year ago
4
The genome reference limit.
#115
Ajalapond
opened
1 year ago
1
Could not open
#114
israfilhzau
opened
1 year ago
0
Add Test scripts and Continous Integration.
#113
srirampc
closed
1 year ago
0
Problem with M1 chip installation
#112
GM110Z
opened
1 year ago
3
Can fastANI calculate a standard desviation for each ani value?
#111
gcerbino
opened
1 year ago
0
Gets the sequence of corresponding positions in --visualize output
#110
zpinocchio
opened
1 year ago
0
Merge Sei fall2022
#109
srirampc
closed
1 year ago
0
#query# fastANI
#108
Mup12
closed
1 year ago
4
minimizer/kmer string compression
#107
jianshu93
opened
2 years ago
5
FastANI output and matrix values do not match?
#106
pau-deyebra
closed
2 years ago
1
Error in number of mapped fragments
#105
eric-kernfeld-dzd
closed
2 years ago
1
No results in output directory?
#104
sekhwal
closed
2 years ago
3
Clustering
#103
shlomobl
opened
2 years ago
1
11
#102
allen-zhan340
closed
2 years ago
0
FastANI 1.33 using more threads than allocated
#101
aaronmussig
closed
1 year ago
3
Share workflow for visualizing FastANI results
#100
moshi4
opened
2 years ago
16
issues with reference list file
#99
rosave9
opened
2 years ago
0
Error when running Rscript
#98
carolinasisco
opened
2 years ago
1
Column labels of the visual output
#97
rotheconrad
opened
2 years ago
2
libgsl.so.25 potential issue
#96
AdamSorrel
opened
2 years ago
7
Dependency conflict when installing from bioconda along with Python 3.9
#95
jlumpe
closed
2 years ago
8
How to get the alignment fraction value?
#94
liyangjie
opened
2 years ago
1
What does NA mean in the result of fastANI matrix output?
#93
antoniocamillo
opened
2 years ago
1
parameters for viral genomes
#92
YiJessePi
opened
2 years ago
3
Compilation fails on macOS 12/`conda`: c++ command problem
#91
widdowquinn
opened
2 years ago
0
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