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ParBLiSS
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FastANI
Fast Whole-Genome Similarity (ANI) Estimation
Apache License 2.0
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ERROR, skch::validateInputFiles
#88
analopezlopez
opened
2 years ago
2
FastANI heatmap
#87
spencer411
opened
3 years ago
0
visualize the .matrix output
#86
sowptika
opened
3 years ago
2
much slower than usual under MacOSX
#85
gaboentropy
opened
3 years ago
0
[Question] Recommended ANI cutoffs for grouping metagenomic assembled genomes from multiple assemblies?
#84
jolespin
opened
3 years ago
0
[Question] ANI values
#83
mewu3
opened
3 years ago
1
Error, skch::validateInputFiles
#82
BernardNyarko
closed
3 years ago
1
Compatible license?
#81
nileshpatra
closed
3 years ago
3
[QUESTION] strain ANI
#80
alienzj
closed
3 years ago
2
n50 calculation using bbtools or other tool?
#79
rotoscan
opened
3 years ago
1
Some missing results in output file.
#78
spencer411
opened
3 years ago
1
can fastANI generate an alignment of conserved regions used for calculating ANI values?
#77
limin321
opened
3 years ago
1
Large number of genomes
#76
larssnip
opened
4 years ago
2
General question smaller contigs
#75
mdabalkey
opened
4 years ago
1
Multiple ANI per query/reference genome pairs
#74
rebeccagarner
opened
4 years ago
3
The tree built from fastANI .matrix data should be called phylogram or cladogram?
#73
limin321
closed
4 years ago
4
For plant genome
#72
yilunhuangyue
opened
4 years ago
4
few basic questions on running fastANI
#71
limin321
closed
4 years ago
3
--minFraction too stringent for fragmented genomes?
#70
wwood
closed
4 years ago
9
j2md can return values greater than 1
#69
rsharris
closed
4 years ago
1
Fix GSL path in configure.ac
#68
apcamargo
closed
1 year ago
2
Inconsistent output across runs of all-versus-all ANI computation
#67
apcamargo
closed
4 years ago
25
Cannot compile FastANI
#66
MrTomRod
closed
4 years ago
4
FastANIv1.3 for OSX
#65
asetGem
closed
4 years ago
1
Output ani values that much below 80%
#64
lijierr
closed
4 years ago
2
Trouble with --minFraction
#63
wwood
closed
4 years ago
3
relocation error
#62
liliangzhi1996
closed
4 years ago
3
Programs for computing a tree from .matrix file?
#61
raw937
closed
4 years ago
6
Matrix output does not equal default output
#60
mdiorio371
closed
4 years ago
2
Testing how FastANI handles reverse complemented sequence
#59
cindy-tu
opened
4 years ago
1
fastANI skips reference genomes
#58
AlmogAngel
closed
4 years ago
21
Different results based on genomes in reference list
#57
aaronmussig
closed
4 years ago
3
All vs. all ANI comparison
#56
VadimDu
closed
4 years ago
1
many-to-many expected output?
#55
mldillon-LBL
closed
4 years ago
3
Different values generated with the same two genome
#54
liaochenlanruo
closed
4 years ago
1
Suppress console output and write log file
#53
vinisalazar
closed
4 years ago
1
Output is still empty after two days running
#52
rainjy
closed
4 years ago
4
fastANI and completeness
#51
YiJessePi
opened
5 years ago
1
Filenames do not support blank
#50
cihga39871
closed
4 years ago
2
Output is empty
#49
minjaekim45
closed
4 years ago
8
Installing FastANI on local computer (Mac OSX)
#48
cssulliv
opened
5 years ago
3
Recommended N50
#47
donovan-h-parks
closed
5 years ago
2
FastANI gives different results depending on genomes in the reference list
#46
donovan-h-parks
closed
5 years ago
9
Error: skch::validateInputFiles, Count of query and ref genomes should be non-zero
#45
kushalgohil
opened
5 years ago
1
AAI support
#44
vinisalazar
opened
5 years ago
1
How to interpret n mapped fragments?
#43
SilasK
opened
5 years ago
7
kmer size selection
#42
dacheampong
closed
5 years ago
1
configure not finding gsl_cdf.h when gsl path is given?
#41
jolespin
closed
5 years ago
4
Is it possible to sketch genomes abd save them for later?
#40
SilasK
closed
5 years ago
1
fastANI process is aborted or killed.
#39
microDM
closed
4 years ago
4
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