-
Thanks for the `heasoft` package, it save me 3 hours!
This is a package request that we can add astronomy packages like `IRAF` `TOPCAT` `SAOImageDS9`
-
#6055 Bug Report
### Affected tool(s) or class(es)
PostprocessGermlineCNVCalls
### Affected version(s)
4.1.8.1
### Description
Process of calling copy number segments and consolidate sam…
-
Hi,
I used genomescope from this repo:
https://github.com/schatzlab/genomescope
and
https://github.com/tbenavi1/genomescope2.0
And got weird results:
From v1:
https://ibb.co/FXPYPgV
…
-
Hi,
I am trying to run Piggy for a couple of closely related bacterial genomes but the analysis fails during creation of the cluster files with “Cannot open output file: piggy/cluster_intergenic_fil…
-
An initial quick hack seems to imply that CRAM support might be quite easy to add. The only difficult bit is probably ensuring that the required references are present, and telling htslib where to fin…
-
Hi (Thank you for answering my other question).
cctools genotype writes strange symbols into the vcf file.
An example bam, index and output files can be found at https://cb.skoltech.ru/~enabieva/f…
-
Hi Alex,
I am currently working on some ribo-seq from human cell lines. The analysis I want to do and some of the tools I want to run require that I have this data mapped to the genome as well as t…
-
Hello Prokka team,
I have been using Prokka with a default setting for annotating E. coli genomes. I noticed that the identified virulence factor genes are different between ABRicate (VFDB) and Prok…
-
error running the processConservation
Hi Idan,
I have a problem when I run processConservation, I don't know how to resolve the error is :"Subroutine overlap redefined at scripts/Mapping.pm line 364…
-
Dear Team,
iguide has been used successfully in my lab for human datasets. Thanks. It is a nice and useful tool.
Now we are testing iguide in analyzing mouse datasets. The mm10 reference genome …