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Computer: mac osx
My quest for getting things to work:
First, a non-clang compiler, couldn't figure that out:
```
make CC=/usr/bin/gcc
Cloning into '/Users/smwaters/canu/src/utility'...
War…
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Hi everyone!
First of all excuse me if this is not the proper place to ask the following question.
I am trying to use khmer in bacterial whole-genome sequencing data (not metagenomics) to filte…
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Hello, I'm trying to run the program and encounter the following error:
`Neptune v1.2.5
Estimating k-mer size ...
k = 19
k-mer Counting...
Submitted 2 jobs.
Traceback (most recent call last)…
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Currently Loaded Modulefiles:
1) psc_path/1.1 3) intel/17.4 5) gcc/5.3.0 7) java/jdk8u73
2) slurm/default 4) xdusage/2.0-4 6) gcc/7.3.0 8) canu/1.7
+ cd /pylon5/mc5fqip/…
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Hi there,
Thanks for putting together this super useful software - it seems to be working well with my dataset.
Now that I have both phased and unzip contigs, I'd like to produce a plot similar…
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Hi,
I used canu -p PMKlongBACs -d PMKbacs-raw-reads genomeSize=150k gridOptionsmeryl="--mem-per-cpu=12g" -pacbio-raw PMK_PacBio_reads.fasta.gz , submitted via slurm.
This is the canu.out file:
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I met a problem when I use command gem-indexer. The comment is "GEM::FatalError (sa_builder_store_suffixes.c:138,sa_builder_store_suffixes_prepare)
SA Builder. Maximum SA-bucket (6 GB) larger than …
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Hi，professor，
I selected the longest 100X reads for metagenomics assembly, then the error accurs like below. Problem of RAM not enough should have been ruled out because of low memory use ( command：
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This issue is continuing issue [1582](https://github.com/marbl/canu/issues/1582) and is related to issue [1502](https://github.com/marbl/canu/issues/1502). The issue 1582 was closed due to being "idle…
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Hi there,
The new version you published yesterday is something I really need at the moment! My problem is that I tried to generate a genome-position-based bam file and IGV is not displaying anythin…