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Dear developers,
`scv.tl.velocity(obj, diff_kinetics=True, min_r2=0.1, perc=[7.5, 92.5])`
gives the error below
ValueError: too many values to unpack (expected 2)
No error with
`scv.tl.…
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Step: losses = train(model, likelihood, Y, steps=10000, batch_size=40)
Error:
UDA out of memory. Tried to allocate 438.00 MiB (GPU 0; 14.76 GiB total capacity; 13.41 GiB already allocated; 163.75…
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Currently, all of the ASCT+B tables are stored in a single Google Sheets workbook with many sheets.
Now, in ASCt+B Google Drive, we're making a dedicated folder for ASCT+B tables, with organ names …
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Some EFO URIs are missing the "www"
e.g. http://ebi.ac.uk/efo/EFO_0600073
vs a more typical term e.g. http://www.ebi.ac.uk/efo/EFO_0010904
This is causing some issues with correctly displaying th…
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I'm using refactoringPWDmatrix branch in this folder /mnt/grey/DATA/rawData_2022/Experiment_10_Olivier_HiM_Multiplex_pancreas/Deconvolved/Analysis/019_ROI_Links
I have executed pyHiM -F .
All the…
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* evalutils version: 0.3.1
* Python version: 3.9.7
* Operating System: Ubuntu 20.04
### Description
I encounter the follow error when testing the docker with `./test.sh`
The tested segmenta…
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[DDI_Treatment-Rifampicin_Midazolam-Backman1998.zip](https://github.com/Open-Systems-Pharmacology/PK-Sim/files/8357967/DDI_Treatment-Rifampicin_Midazolam-Backman1998.zip)
Loading this snapshot works …
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## Description
In `scvelo/preprocessing/neighbors.py::_get_rep`, the variable `rep` is referenced before assigned when not entering the if-else clause.
```python
import scvelo as scv
from …
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```
Not all pancreatic cell types were defined as part_of pancreas or its
subclasses, such as 'pancreatic A cell', 'pancreatic D cell', 'pancreatic PP
cell', and 'pancreatic epsilon cell'.
We want …
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**CL term**
CL:0005019 'pancreatic epsilon cell'
"Ghrelin secreting cells found in the exocrine pancreas."
**Suggested revision and reasons**
Please consider adding a link for part_of (exocrine?…