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Synonyms; SCMC
Definition;
A protein complex comprised of NLRP5, OOEP, TLE6, ZBED3, and KHDC3L, expressed in oocytes and early embryos of mammals, involved in early embryonic cell division process…
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We have to have consistent data structures for comparing synteny calculation methods. So far the only data structure we have are the histograms of assignments, and those are pretty much a mess for th…
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Make a "lite" embeddable browser that just does a few things, and ends up feeling a lot like JBrowse 1.
* Single linear genome view
* Extensive JSON configuration API similar to protein widget
* …
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What if my species' chromosome have undergone split and fission?How should I use SyRI, or just the one-to-one synteny chromosme?
![image](https://user-images.githubusercontent.com/20680150/82707967-b…
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I am using Ragout 2.3 and I get this error
[12:58:39] INFO: Reading ./sibelia-workdir/100/blocks_coords.txt
[12:58:39] INFO: "ctet_harv" synteny blocks coverage: 85.56%
[12:58:39] INFO: "ctet_SIIP…
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Hello,
When using FUNANNOTATE COMPARE for comparing to different genomes of the same species, should we convert the genomic coordinate between the two assemblies? I am intending to cam pare one geno…
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I've narrowed it down to a particular genome (B_erythrophleiGAS401.fna) from NCBI that is causing it to error. Here is a smaller dataset of two genomes that gives a similar error using the newest vers…
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Dear Jon,
Thank for the latest release of **funannotate**. I tried it on _Linum usitatissimum_ genome and almost everything went fine. However, InterProScan search is still running for 10+ days and…
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Hi Dr.Tang,
I'm doing a three species synteny and i notised that the size of rectangle in karyotype figure did not match the real length of the chromosomes.
For example, the No1 chromosome is the l…
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D3 version 4 supports canvas elements. Currently we are using SVG, which means each element drawn is added to the DOM. This often results in poor performance, such as when drawing larger micro-synteny…