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Hello there,
I was trying to run the identify step and encountering this error, several times.
[2023-04-13 14:12:26] INFO: GTDB-Tk v2.1.1
[2023-04-13 14:12:26] INFO: gtdbtk identify --genome_dir …
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**Submitting author:** @ParkvilleData (Babak Shaban)
**Repository:** https://github.com/ParkvilleData/MetaGenePipe/
**Branch with paper.md** (empty if default branch):
**Version:** 1.1.5
**Editor:** …
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The `fishbase` dataset (A table of all the the species found in FishBase, including taxonomic classification and the Species Code (SpecCode) by which the species is identified in FishBase.) is listed …
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Would be good to have filter descriptions to make into tooltips when hovering over filters in the menu. This existed in the static JSON filter definition but not in the database and so these are lost …
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Hello! I am having trouble with the `default_matrix` taxonomy import parser. I need to manually import my taxonomy from Kaiju (I could not use the Kaiju parser due to the incompatibility of the newer …
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Hi,
I am having a problem converting GTDB taxonomies to NCBI taxonomies. When I run this command I only get NA results in my output file.
I first run wget to get the necessary GTDB files (I hav…
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Hi，
Thanks for sharing this useful tutorial! Learned a lot!
I have a question about the **asv.counts table**.
For example, ASV609, ASV610, and ASV611 all have the same features at every level. …
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I am trying to run grist on my own files -- i.e. circumventing the "download_sra_wc" rule. If I follow the "Where to insert your own files" instructions verbatim, I get the following "error": `warn: n…
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Hello,
I have been following the MetONTIIME pipeline for analysis of full length 16S ONT sequences from human oral microbiome samples. I've been going through each step of your pipeline and I saw t…