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JN.1+A13712G(Orf1b:K82R)+G7850T(Orf1a:A2529S)+T4804G(Orf1a:D1513E)+T23600C(S:S680P)
GISAID query: G7850T, T4804G, T23600C
No. of seqs: 20(South Korea 1 China 6 USA 1 Brunei 9 Japan 3)
First: EP…
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Transferred from sars-cov-2-variants/lineage-proposals#1827
Thx @aviczhl2 .
Mutations based on JN.1: C18657T, C19716T, C21627A(S:T22N), T21738C(S:F59S) / T22928C(S:F456L), C23039G(S:Q493E), G24872…
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**Description**
**Sub-lineage of:** KP.1.1.3 (S:R346T, F456L, K1086R, V1104L)
**Earliest sequence:** 2024-5-21 – Spain, Catalunya
**Most recent sequence:** 2024-6-3 – Canada, Ontario (2 seq)
**Con…
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Previously tracked as Branch 16 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1.22 > Orf1a:G445V (G1599T) > C11704T > S:F456L (T22928C)
Query: G1599T, C11704T ,T22928C
…
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From branch 100 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1.4+S:S640F+S:F456L,Orf1a:P361L,H417Y,Orf3a:T24I
Query: C774T,C23481T, T22928C
No. of seqs: 16 (Canada 15…
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- [X] 1) download sequences from Genbank (with possibility of addon to augment request specifications later); access problem? (https://www.ncbi.nlm.nih.gov/genbank/) (resolved by https://github.com/kr…
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There seems to be a 2-nuc mutation under JN.1.
JN.1+T20285C,A20284T(Orf1b:I2273S)
GISAID query: T20285C, A20284T, C18894T,-13584,-1762,-C774T,-29684,-12781,-17334
No. of seqs: 41(Brazil 2 Cana…
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**Defining Mutations:** `JN.1.16.1` > `C18283T(ORF1b:H1606Y)` > `T856C, del21653_21655(S:S31del), C25669T(ORF3a:H93Y)` > `G598A, A9328G, T18630C, G23149T(S:K529N)`
**Query:** `A9328G, G23149T`
**Ear…
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**Defining Mutations:** `KP.3.2` > `C29530A` > `C5407T` > `C17745T, T18748C(ORF1b:Y1761H)` > `A22991G(S:S477D`, _on top of `G22992A/S:S477N)`_, `C25614T`
**Query:** `C17745T, A22991G`
**Earliest seq…
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## Introduction
As we have previously discussed, the healthcare delivery space has seen a rapid and unprecedented increase in available health information technology (HIT) applications and their su…