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Hi,
I have a set of tumor derived PDX samples. I ran Arriba on the RNA-Seq data from these samples. The number of structural variants identified by Arriba range around 20 to 30. Is this number typi…
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I am noticing cases where a protein aligns to the genome such that a valid intron is being reported as a deletion. Is there a setting that can be used to control this behavior? Perhaps, the ability to…
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Need to try this:
[MeShClust](https://github.com/BioinformaticsToolsmith/Identity)
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hi,
I encountered a problem with insufficient memory when using this software. Is the software's memory requirement unusual in step HiCAT_HOR.py?
I installed the software using conda and used the da…
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Hi Manish,
I have a few questions regarding getting the whole genome alignments of two set of plant genomes. My understanding is that nucmer is generally more sensitive while that is not the case w…
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Hi, first of all, thank you for your contribution. I have this problem which I was unable to proceed with the tutorial as I was not able to download the correct file. I tried $git clone and download i…
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Hi, have sued NASP in the past and found it very useful. Is ti possible to get a pseudo whole genome alignment from the pipeline? I want to be able to use one to check from recombination using Gubbin…
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Discuss design of miR quantification.
- How does the current design work?
- Are there issues with the current design?
- What are possible alternatives?
Based on the discussion:
- [ ] Decide design
- …
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Hello,
I tried cloning and installing as described in the documentation but failed to install
```
git clone https://github.com/RolandFaure/Hairsplitter.git
cd Hairsplitter/src/build
cmake ..
m…
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Hi `simpleaf` team
First off, a thank you: we've been using `simpleaf` to do lots of mapping for a single cell atlas project, and it has been making everything faster and smoother 🚀 (especially bei…